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MS/MS Interpretation

Probability Assignment

Protein Quantification

Curation of Protein IDs

CGIs

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LC-MS

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software

Curation of Protein IDs

Please note; this documentation may be out of date. Please see the documentation on the SPCTools Wiki for up-to-date information.

Pep3D

Please note; this documentation may be out of date. Please see the Pep3D documentation on the SPCTools Wiki for up-to-date information.

View LC-MS and LC-MS/MS results in a 2D mz vs. time plot. If identifications are available via an INTERACT interface with PeptideProphet results, sequencing attempts and identification quality are overlayed on the plot; each spot is then a hyperlink to the ms/ms spectrum and identification. Can be used to evaluate data quality among its many applications.
Go to the CVS repository

Reference: ""A Tool to Visualize and Evaluate Data Obtained By Liquid Chromatography/Electrospray Ionization/Mass Spectrometry "", by X-J. Li et al. Analytical Chemistry, manuscript accepted.

CGIs

A mix of usefull CGIs.
Go to the CVS repository